Scaffold Ga0307507_10000384

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000384
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91368
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (50.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F004318	Metagenome / Metatranscriptome	443	Y
F008599	Metagenome	330	Y
F019458	Metagenome	229	Y
F032886	Metagenome	178	Y
F066630	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000038415	F008599	GAG	MLLVAVKRIGLLNRQEEYLYLLIMILGDLIAYRGGIINLKIGPI
Ga0307507_1000038418	F000630	N/A	LVGLTLKRYIRVKDLEANLGKRNQSYSIVNAIGDKYLRALKRTNKGRKYNSNTFKNRNNKTKRLALLGRYPSR
Ga0307507_100003842	F000630	GGAG	MGVKGTEAGSGKGNPSRSMGNAMGGKYLRAPRGPNKGRKYNGNTLKDRNNRTKRLASLGRCPSR
Ga0307507_1000038422	F032886	N/A	MTIKLEYLLINSDEDEKEANWEHLNLNNITEAETKTITKRGLVTGIITLLDTISITL
Ga0307507_1000038425	F004318	N/A	VLSGLRLSLVSYTVSYLVLGLVLDIELVLNLGLVLDLGLGSLSIFFIVEY
Ga0307507_100003843	F066630	GAG	MLSAASIENYNTLLSTQKGLKAATQWLISQNMLDQFQVAKKIAIEGKGASNRRPLITL
Ga0307507_100003844	F000746	GGA	MVAVVGNTEEGTINVDYKATVEVPVEVHFKVIARRSTIFIRS
Ga0307507_100003845	F019458	N/A	MKLDIFNKLKESSAFSFNNRYLAYVFYGIMPDIGAAGVSIVGEP
Ga0307507_100003847	F002220	AGG	MYLLKSNSVVKLSFSFGFAIRFAFTSLSSLRAKNWSSPKIIILLVYMPMIPNGVPVVVIRKQGLNIEVVIKSFSL