NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000312

Scaffold Ga0307507_10000312


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000312 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97771
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F020829Metagenome221Y
F032886Metagenome178Y
F060493Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000031213F032886N/AMELEYLLINSDKEEKVANWGYINLNNAIEVETKTTIERGLVTDIITPLDIASITL
Ga0307507_1000031217F020829GGTGGMSPNRINSVPLVFSKLITDIIFFIYRTPLTLGLYILIIYTGPLYVWIIITAISRLTACYNYKDRLIALLIIKHIYIAAFGLYRS
Ga0307507_1000031222F060493N/AMQKDFVVLMLSLDISGAYNNIPYERLLYILRAKGFPE
Ga0307507_1000031225F000630GGAGMGVKGIEVDLGKGNLSRSIGNTIGGKYLRALRGPNKGRKYNGNTLKNRNNRTKILALLGRYPSR

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