Scaffold Ga0307507_10000311

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000311
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97826
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (65.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003457	Metagenome	485	Y
F007161	Metagenome	356	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F024756	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000031117	F007161	AGCAG	VPYYLINGCKSDRGIVLKLGLKVPLGVPYSLTKEVKHFGFFGKEIVIVNTELPLYLNPLIFKGRVYPVG
Ga0307507_1000031122	F024756	GGA	MPIHSVAYYIIAGESAGTNSLKRLMLRLGSIMVVGKIEVSNLYKTFPDLLL
Ga0307507_100003113	F003457	N/A	MAGLVCFFGTKAFLILAIIVAKIVCSGFLVSRTSGVAPIIWISKVLSKLRLSLVSYIVSYSVLDLVLGLVLDIELVLDLGLGSLSILFIVEYQFFWYLYILSLDLCLV
Ga0307507_100003118	F021494	GAG	VSYIPTSASIFKSIIISSFSPVLTSWLYTLYRLAVNVIFAVLNLIFNYPGLKLAIAIHRGLSIGRPLPYVPYNPYVPIRSGNIA
Ga0307507_100003119	F020829	AGTAGG	MPLVSSKLITNIIFSICGTPLTLGLYILIIYTGPLYVWIIITAISRLTACYNYKDRLIALLIIKHTRIAAFSSYRSWNPWGQYINYI