Scaffold Ga0307507_10000298

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000298
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99460
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002793	Metagenome	529	Y
F006298	Metagenome	376	Y
F056201	Metagenome	137	Y
F066630	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002981	F002793	N/A	MDIIPLVNNLEILGIFKDKDKKEEDSITDALSIIL
Ga0307507_1000029818	F000630	GGAG	MGVKGIEAVLGKRNPSRSIVNTMGGKYLRALRRPNKGGKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000029822	F066630	N/A	MLSAAGTENYNTLLLTQKGLKAATRWLIGQNVLDQFWVAKEIAIESKGASNRRPLITLQE
Ga0307507_1000029825	F006298	N/A	MERRLVIKNSNGLYAIYLTILSEVLIRRVVLNFYIYKELFGLINLTLKIFYAFILNQEALEVGYSNFIISNVSCTLIKLIICLLLLIKGVSS
Ga0307507_100002988	F056201	N/A	MALSRSVKLRGPNTLTRKIPYGKMPRWIIVVGMPREYLSIVYRGKETN