Scaffold Ga0307507_10000294

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000294
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99622
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F004663	Metagenome	428	Y
F006298	Metagenome	376	Y
F041673	Metagenome	159	Y
F065308	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000029411	F000746	GGA	MVAVVGNTVEGTINDYKAKVEVLIEVHFKVIARRSAIFIRN
Ga0307507_1000029412	F006298	N/A	LCAIYLTILSKVLVRRVVLNFHIYKELFGLINLTLKIFYAFILNQKALEVGYSNLIISNVSYTLVKLIIYLLSLIKRVPS
Ga0307507_1000029414	F065308	AGG	MEEITLSTLVAAPLMSPLGNSFFSNSSLLMLPNPFSSNTPIPFL
Ga0307507_1000029418	F004663	AGGA	MGVLKESRLGNINKEGLPKNKSPKGDLKGAIAELLRVISFAGGEPVLLLPSLNKPY
Ga0307507_1000029420	F041673	N/A	MFFLGMPYRPISFLTTHKALLAGLSTGVCFYIGVITGVTGRTWLMRVLLVVAAVRKVGI