Scaffold Ga0307507_10000292

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000292
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99829
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (52.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002555	Metagenome	548	Y
F021494	Metagenome	218	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000029247	F002555	GGA	MLGIFKDEDKEEGDGVTDALSTMLRLLREESAEAS
Ga0307507_1000029250	F021494	N/A	VELSIPISYIPTSLSKSEFVIASGSSPVLTSWLYTPYKLAACVIFTALNLILNYPGLKLAVAVHRGLSTRRPLPYIPCVPYVPI
Ga0307507_1000029253	F000630	GGAG	MGVKGIEVDLGKGNLSYSIGNAMGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGGCPSR
Ga0307507_1000029255	F078226	N/A	VLDIDADKNTNNNNSKEELEDPNSYYLILFGTFTIDKSTFISVKLANKACAYLLTATSMEPTTETDPFNYNIITAVLRYTSTVFMGIMINTSALKKSTASYGQF
Ga0307507_100002928	F000247	AGG	VRTNVIYIALSCKRTPYTEVAYINCFISSSNISVGKTLVPSSGVPFTYPSVGGKPYYNGGLSLNGSIDPTSIGL