Scaffold Ga0307507_10000290

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000290
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99961
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (41.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F027375	Metagenome	194	Y
F032886	Metagenome	178	Y
F038927	Metagenome / Metatranscriptome	164	Y
F041673	Metagenome	159	Y
F056201	Metagenome	137	Y
F065308	Metagenome	127	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002901	F000746	N/A	MIITGLIKYIVAVVGNMEEGTININYKVIIEVLIEVYFKVIARRSAIFIRSQIAS
Ga0307507_1000029014	F056201	N/A	MAPSRSIKLWGPNTLTRKIPDGKIPRGIIVVELSREYLSMACRGKEIN
Ga0307507_100002902	F027375	N/A	MVPLLDIIPFNVLNKSYRFKNRCAGSTTMIIIIIIAKYPKNFIYLLTITRIVLATSLVFILVGGKPIIKSIINSNIGPCGI
Ga0307507_1000029020	F081096	N/A	MHTYRGGYRGNTGQLYKDLTVKDTGQLIKGGDTSLVSRRGGSRLFGVGPSVSTAPLLQDTVGLL
Ga0307507_1000029026	F032886	GGA	MIIESEYLLIISNKDEKKANWEHLNLNNVTEAETKTITKQGLVTGIITPLDTISIAL
Ga0307507_1000029031	F065308	AGG	MEEDKRKDFYLIGIETTLSSVVVAPLRSPLGTSFFSNSSLLILPNLISFNTPAPFL
Ga0307507_1000029032	F038927	N/A	MKEIIANRLIKALPKQRFQNFVNLVRIVDIKERLDKEKQLKDLREKVRARRKDLDKIMV
Ga0307507_100002905	F041673	N/A	MAIKSLSRLVTFFLGMPYRPTSFLAVYEALLAGLSAGVCFCIGVAAGVMGRTWLVRVLLVVAAVRKVDV