Scaffold Ga0307507_10000289

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000289
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100130
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (58.97%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F003457	Metagenome	485	Y
F003725	Metagenome	471	Y
F007022	Metagenome	359	Y
F016500	Metagenome	246	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000028910	F007022	N/A	MVTCFNCGKDSYFATSCPELKDIGNIKEIEEKETSNKLGKEEP
Ga0307507_1000028911	F016500	N/A	MDKLIVEIIKAKEELDSFYSIRGFPVTDYLNLLQVNFNSFYTNNKPKVLYAFYSKFAFF
Ga0307507_1000028925	F003457	N/A	MAGLVCFFSAKAFLISAIVTVKIICSSFLASCASGVAPIMWISKVLSELKSSLVSYVVSYLGLGLVLGIELVLDLGLGSLSILFVVEY
Ga0307507_1000028928	F002555	GGA	MLGIFKDKDKEEGDGVMDSLSIMLQLLGEELAEASWLI
Ga0307507_1000028931	F056201	N/A	MAPSRSIKLRGLNTLTRKIPYGRIPRGITVVGVPRKHLSIAYRGKEIN
Ga0307507_1000028932	F003725	GGAG	MNLYIHLKETAKLVQKRIKRYYNAKRSKGLDLKEGDKVWLLYKNFKS
Ga0307507_1000028938	F003725	N/A	MSSIAKQRIEILINLYTDLIETAKLVQQRIKRYYNAKRSKGPDLKEGDKVWLLYKNFKS