Scaffold Ga0307507_10000272

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000272
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101702
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F004663	Metagenome	428	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002721	F000630	GGAG	MGVKGIEADLGKGNLSYSIGNAMGGKYLRALRGPNKGRKYNGNTFKDRNNRTKRLASLGGCPSG
Ga0307507_1000027211	F002220	AGG	MHLLKSNSVVKLSFSFGFAIRFAFTSLSSLRAKNWSSSKIIVLLVCMPTIPNRVPVVVIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000027212	F000630	GAG	MGVKGIEVDLGKGNPSHSISNAMGGKYLRAPRGPNKGGKYNGNTLKNRNNRTKRLALLGGCPSR
Ga0307507_100002723	F027375	N/A	MVPLLDIIPLSGLNKSHYSKNRSTSSAAMIIIIIVKYPKNFIYLLIITRIALATSSILILVRGKPIIKSIINSNMGLYGIRSTNNLL
Ga0307507_1000027233	F004663	AGG	LEESRLGNINKEGSPKNKLPKGDPRGVIAELLGVISLAGGKPVLLLPSLDRPC
Ga0307507_100002724	F024756	GGA	MLIYSIAHYIIIGESTSTNSLKYLVPRLKSIIVAGKIEISNLYKTFLDLLL