NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000269

Scaffold Ga0307507_10000269


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000269 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102223
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F004318Metagenome / Metatranscriptome443Y
F050927Metagenome144Y
F064278Metagenome128Y
F067281Metagenome125Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000026912F004318N/AMSKVLSELRLSLVSYIVSYLGLGSVLGTESVLDLGLGSLSIFFMVEYQFF
Ga0307507_1000026913F096350N/AMAGLMCFFGAKAFLILAIVIVKIVYLGFLASYINGVTLII
Ga0307507_1000026917F064278N/AMHLANAYYNTLINPTTVTCFNYGKNSYFATSCPELKDAGNIKEIKEEELSNKLGKEEP
Ga0307507_1000026926F002555AGTAGMLGIFKDKDKEKGDSVIDSLSTILQLFKEELEEAS
Ga0307507_1000026931F002555AGTAGMLGIFKDEDKEEGDGITDSLSTMLQLLRKESEEAS
Ga0307507_100002694F002555AGTAGMLGIFKDKDKEEGDGITNSLSTMLRLLGEELEEAS
Ga0307507_100002696F050927N/AMPEYPATRKEGIAQFIYTVTPLLSIDADKEIVREVIKQYILKVSNAHAKYILYLYL
Ga0307507_100002697F067281AGGMLSIYYIYTSSRFNSHSIKLVTLKLYNYNSLEKPIIRRVENHFIKRLNIAVLDTASTPIRIYSIYA
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Institute for Fundamental Biomedical Research
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