NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000268

Scaffold Ga0307507_10000268


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000268 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102296
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (57.14%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F006298Metagenome376Y
F035578Metagenome171Y
F056213Metagenome137Y
F064278Metagenome128Y
F071034Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100002682F035578N/AMIITGLIEYMVARVGDIAENTINVDYKSIVEVLIEVYLKIINRRNAMFVRSQITS
Ga0307507_100002683F006298N/AMERRLVIKNSNGLYAIYLTILSKVLVGRVVLNFHIYKELFGLINLTLKIFFAFILNQEALEVGYNNLTISNVLCALAKLIICLLLSIKRVPS
Ga0307507_100002685F071034N/AVHCVVGETSRYFTTLVAVPAIEISFCLRISCLFSSFSTVKTIEPNLVCGSCLFTLDKIHLGSPCIPIGLKVSISSFRSLEPPSPIKGKVGTPWAII
Ga0307507_1000026853F000630GGAMLERHIGVKGIEANLSKRNLSYSIVNAIGGKYLRALRRPNKGRRYNSNTLKNRNNRTKRLALLGRYPSR
Ga0307507_1000026854F000630GGAGMGVEGTEANLGKSNPSYSIVNAMGGKHLRALRRPNKGRKYNSNTPKNRNNRIKRLALLGRRLSR
Ga0307507_1000026855F056213N/AVGLGVRRSILLYYLLITFAQALRASSRSIPIREVFSLGLKNLIRLLISAELF
Ga0307507_100002687F064278N/AMPLANTYRNTLINPTMVMCFNYRKDSYFAISCPEQKDIGNIKEIEEEEMSNKLGKEEP

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