Scaffold Ga0307507_10000268

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000268
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102296
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (57.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F006298	Metagenome	376	Y
F035578	Metagenome	171	Y
F056213	Metagenome	137	Y
F064278	Metagenome	128	Y
F071034	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002682	F035578	N/A	MIITGLIEYMVARVGDIAENTINVDYKSIVEVLIEVYLKIINRRNAMFVRSQITS
Ga0307507_100002683	F006298	N/A	MERRLVIKNSNGLYAIYLTILSKVLVGRVVLNFHIYKELFGLINLTLKIFFAFILNQEALEVGYNNLTISNVLCALAKLIICLLLSIKRVPS
Ga0307507_100002685	F071034	N/A	VHCVVGETSRYFTTLVAVPAIEISFCLRISCLFSSFSTVKTIEPNLVCGSCLFTLDKIHLGSPCIPIGLKVSISSFRSLEPPSPIKGKVGTPWAII
Ga0307507_1000026853	F000630	GGA	MLERHIGVKGIEANLSKRNLSYSIVNAIGGKYLRALRRPNKGRRYNSNTLKNRNNRTKRLALLGRYPSR
Ga0307507_1000026854	F000630	GGAG	MGVEGTEANLGKSNPSYSIVNAMGGKHLRALRRPNKGRKYNSNTPKNRNNRIKRLALLGRRLSR
Ga0307507_1000026855	F056213	N/A	VGLGVRRSILLYYLLITFAQALRASSRSIPIREVFSLGLKNLIRLLISAELF
Ga0307507_100002687	F064278	N/A	MPLANTYRNTLINPTMVMCFNYRKDSYFAISCPEQKDIGNIKEIEEEEMSNKLGKEEP