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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033179 Open in IMG/M |
| Scaffold ID | Ga0307507_10000251 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 104917 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (61.90%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000630 | Metagenome | 971 | Y |
| F000746 | Metagenome | 908 | Y |
| F002220 | Metagenome | 581 | Y |
| F006298 | Metagenome | 376 | Y |
| F007022 | Metagenome | 359 | Y |
| F064278 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307507_1000025116 | F064278 | N/A | MPLANTRYNTLINSISVTCFNYEKDSYFTISCLELKDTGNIKEIKEEEEMSNKLEKEEP |
| Ga0307507_1000025119 | F000746 | GGA | MVAVVGNIVKAIINVNYKAIVEALIEVYFEVIARRSAIFVRSQIAS |
| Ga0307507_1000025120 | F002220 | N/A | MESLFRERIYPLKSNSIIKLSFSFSFAIRFAFTSLSSLRVKNWSSPKIIILLVYIPMIPNRVPIVIIRKQGLNIEVVIKSFSL |
| Ga0307507_100002513 | F002220 | AGG | VHPLKSNSIVKLSFSFSFAIRFAFTNLSSLRAKNWSSPKIIILLVYMLTIPNRVPIVIIRKHGLNIEVVIKSFSL |
| Ga0307507_100002514 | F006298 | N/A | MERRLVIKNSNSLYAIYLTILSKVLVRRVVLNFHIYKELFGLINLTLKIFYAFILNQEALEVGHSDLIISNISCTLMKLIIYLLLLIKGVSS |
| Ga0307507_100002515 | F000630 | N/A | MILVRLTMERRIGVKGIEANLGKRNPSHSIVNAMGGKHLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSR |
| Ga0307507_100002517 | F007022 | N/A | MCFNYGKDGYFATFCPEPKDTGNIKEIKEEETPNKLGKEEP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |