Scaffold Ga0307507_10000244

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000244
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105821
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F004318	Metagenome / Metatranscriptome	443	Y
F006298	Metagenome	376	Y
F019457	Metagenome	229	Y
F038927	Metagenome / Metatranscriptome	164	Y
F041034	Metagenome	160	Y
F050927	Metagenome	144	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000024413	F096350	AGTAG	MAGLVCFFGARAFLILAIVILKIVYLGFLVSYTNRVALIM
Ga0307507_1000024415	F004318	N/A	VLSGLRSSLVSYVVLGLVLDLVLDTELVLDLVLGLVLGAELVLDLGLGSLSILFIVEYQF
Ga0307507_1000024416	F041034	N/A	VDVSGNLILVEFGGIPRLIELGGLFRYRVDISGNFRLVDTSGFFKF
Ga0307507_1000024421	F019457	GGA	MQTNNTIILGDDQFSALKEDKLVKANLIAKLKEKLSLITLLLFNGYILSLNEDSIALR
Ga0307507_1000024423	F006298	N/A	MEHRLVIKNSNSLYTIYLTILSKVLVRRVVLNFYIYKELFDLINLTLKVFYAFVLNQEALEVGYNNLIISDVSYTLTELVICLFSLIKGVSS
Ga0307507_1000024424	F000746	GGA	MVAIVGNIEEGTININYKATVEVLIEVYFKVIARRSAMFIKS
Ga0307507_1000024425	F002220	N/A	LFRERVHLLKSNSVVKLSFSFSFAIRFAFTNLSSLRAENWLSPKIIILLVYMPIIPNRVPMVVIRKYRLNIEIVIKSFSL
Ga0307507_1000024426	F006298	N/A	MERRLVIKNSNGLYTIYLTILSKVLVRRVVLNFYIYKELFSLINLTLKIFYAFILNQEALEVGYSNFIIFNISCTLTKLVIYLLLLIKGVSS
Ga0307507_100002444	F038927	N/A	MKEIIANGLIKALPKQRFQNFVNLVGIVDIKERLNKEKQLEDLREKVRAGRKDSDDIIV
Ga0307507_100002447	F050927	N/A	MPEYPATRKEGIAYFIYKATPLLSIDADKETVREVIKQYMLKVCNIYARYMLYLYL