NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000239

Scaffold Ga0307507_10000239


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000239 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106263
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000746Metagenome908Y
F017572Metagenome240Y
F078226Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000023912F000746GGAMVAVVGNMVKDIININYKAIMEVLIEVYFKVIAKRSAIFIRS
Ga0307507_1000023923F017572N/AMLELVYGNIKLLVYKADTYKGQEKDKWQVLKIISYKDVDDEI
Ga0307507_100002399F078226N/AMLNIDTNKNTDNDNSEEELEDPNSCYLILFRTLTIDEATSISVELANKAYTYLLTIISTEPTMETDPFNYNTTTAALRYTSMVFIGIIIDTSALKKSMAGYG

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