Scaffold Ga0307507_10000228

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000228
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107355
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F032490	Metagenome	179	Y
F037003	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000022814	F000247	AGG	VHTYIISIALSYKRILCTEVARTNYLASSLSIYVGKTPVPSSGVLFAYPSVDGKPYYNGGLSLNKSIDLTSTGL
Ga0307507_1000022817	F000247	AGG	VQTNTINVALSYKRTPHTEVAYTNYLASSLNIFVDKTLVPSSGVPFTHLSADRKLYYSSGLSLNKSIDPTSTSL
Ga0307507_100002286	F037003	AGGA	MVEGEIKEYIIKDKTIEETVEAKRNYLSMLAIYYLRATLLTERAYKDIL
Ga0307507_100002288	F032490	N/A	MLNSKNNLIPILNPQRQLIPKGFNLLTIALIPKGKPSNLKDYNNLNKVDINNVLSFINYITIDK