Scaffold Ga0307507_10000227

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000227
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107361
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007022	Metagenome	359	Y
F020829	Metagenome	221	Y
F032105	Metagenome	180	Y
F037003	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000022711	F037003	AGCAG	MLEYSNTYIVRGAEQSTMEEIRKKRTVEGEIKEYAIKDETMEETVEVKRNYLSVPAMHYSRTIPLIERACKDIL
Ga0307507_1000022720	F032105	AGAAG	MEQETDIIITAKVPRLKPVRIIDILKGNVLSPTVIADKILLKTIKVTVSNCLIYMPKVTKLFFKPLPPPLIEPY
Ga0307507_100002273	F020829	AGGA	MPLVSSKLITNIIFSVYRTPLTLGLYTLIIYTSPLYVWIIITVISRLTTYYNYKDRLIALLIIKHTRIATFGLYRSWNP
Ga0307507_100002279	F007022	N/A	MVTCFNYRKDSYFTIFCLKLKDIGNIKKIEKEEMSNKLGKEEP