Scaffold Ga0307507_10000213

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000213
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110384
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F003457	Metagenome	485	Y
F004318	Metagenome / Metatranscriptome	443	Y
F025697	Metagenome	200	Y
F056213	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000021319	F004318	AGTAG	MSKVLSELRLFLVSYIVSCLGLGSVLVIELVLDLGLGSLSILFIVEYQFF
Ga0307507_1000021321	F056213	N/A	VDFGIRRSILLYRLLMTFTQALRAPGRSISIREVFSLGLKDLIRLLTSIESFQPVSFT
Ga0307507_1000021323	F003457	AGCAGG	VCFFSAKAFLISAIITAKIVYLGFLASYANGVALIMWISKVLSELGLSLVSYIISYSGLSLVLGIELVLDSGSGSLSILFIVEY
Ga0307507_1000021324	F000247	AGG	LIQTNTINIALSYKRTPYIEVAHTNYLTSSLNTFIGKTLVPNFGVLFTRPSINRKLYYNSSLFLNGSIDLISTGL
Ga0307507_1000021328	F025697	AGGCGG	VDGKETDGKVVHGKDIGNGKVGSEKVHGFLADFALSIFLLSTKSYKERFSIYFLKLYWL