Scaffold Ga0307507_10000210

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000210
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110754
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (56.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003725	Metagenome	471	Y
F032105	Metagenome	180	Y
F038017	Metagenome	166	Y
F056201	Metagenome	137	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000021022	F003725	N/A	METLINLYNYLKETAKLVQIRMKRYYNTKRSKGPDLKEGDKV
Ga0307507_1000021025	F038017	GAG	VVRLTKYRFKLKDKDKLRVNLKHAAYYILLWIAYMDNIYNIYRAPKDKNQKYLVRIY
Ga0307507_1000021026	F056201	N/A	MAPSRSIRLRGLNTLTRKIPYGRMPRGMIVVGVPREHLSIAYRGKEMN
Ga0307507_100002106	F078226	N/A	MLDIDANKNTNNNNSKEELEDPNGYYLILFGTLTIDKATSISVELANKACAYLLTITPMEPTTETNPFNYNIITTALCYTSIIFIGVIINTNTLKKSMAGYR
Ga0307507_100002109	F032105	GGAG	VDIIITAKALQLKPVRIIDILKGNVLSLIVIADKILLKTIKVTVRDCLVYMPKVTRLFFKPLLPPLIEPY