Scaffold Ga0307507_10000205

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000205
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111476
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (63.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002793	Metagenome	529	Y
F015182	Metagenome	256	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002051	F000746	N/A	MITTGLIKHMVAIVGNIEEGIININYKATVEVLIEVHFKVIARRSAMFIRS
Ga0307507_1000020511	F002793	N/A	MDIIPLIEDLEILGIFKDKDKEEGDSVIDALSTIL
Ga0307507_1000020548	F021494	GAG	VSYIPTSLSKSKSVIASGSSPVLAGWLYAPYKPAIYIIFTALNLILNYPGLKLAVAVYGGLPTRRSLPCILYVPYIPVRSSNVTRRRF
Ga0307507_1000020549	F000630	GGAG	MGVKGIEADLGKGNLSYSMGNTIGGKYLRALRGPNKGRKYNGNTLKDRNNRTKRLALLGRYPSR
Ga0307507_100002055	F020829	N/A	MPLVSSKLITNIIFSVYRTPLTLGLYTLIIYTGPLYIWIVITIIFRLIACYNYKDRLIALLIIKHIHIAAFSLYRS
Ga0307507_1000020558	F091119	AGG	MLWDGDNSYRAYIFKEFTRRCAIDRKGRGRKEVIYLRVANVSCT
Ga0307507_1000020560	F015182	GGCGG	VTKAINDFFKKVFLVFSIILGKDSSVFLEFNIELVK