Scaffold Ga0307507_10000192

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000192
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113201
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (55.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F081096	Metagenome	114	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000019211	F002220	AGG	VHLLKSNSIIKLSFSFGFTIRFTFTNLSSLRAKNWLSSKIIILLVYIPTIPNGVPIVVIRKHGLNIEIVIKSFSL
Ga0307507_1000019212	F000630	GGA	MLERYIGVKGTEANLGKRNSSYSIVNAIGGKHLRALRRPNKSRKYNSNTLKNRDNRTKRLALLGRYPNRQPKI
Ga0307507_1000019213	F021494	AGG	VSYIPTSASISKSVIISGSSPSLTSWLYAIYRSAANVRFTMFSLILNCPGLELAIAVYRGLPIGRSFPCVPCDLYVPIWSSDIAWRCFWPVKAWDGWPSPLVLKVGNAGKAPTSP
Ga0307507_1000019223	F000746	N/A	MVAVVGNIAKGTINVNYKVIMEVLIEVYFKVITRRSAMFIRS
Ga0307507_1000019224	F020829	AGGA	MPLVSSKLITNIIFSIYRTPLALGLYILIIYTGPLYIWIIITIISRLTAYYNYKDRLTALLIIKHIYIAAFGLYRSWNP
Ga0307507_1000019229	F000630	GGAG	MGVKGIEVDLSKGNPSRSIGNTIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLALLGRYPSR
Ga0307507_1000019230	F081096	N/A	MYIYGGGYRGNTGQLDKDLTVKDTGQLIKGGDISLVNRRGESRLSSIGPSISTAPLLQDTVSLL
Ga0307507_1000019253	F091119	AGGAG	MLWDGGNGYRIYVFKESTRRCAISRKGQGRKEVIY