Scaffold Ga0307507_10000191

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000191
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113229
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (38.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F006298	Metagenome	376	Y
F056201	Metagenome	137	Y
F082146	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000019119	F056201	N/A	MAPSRSIELRGLNTLIRKIPYRRVPRWKIVVGLPREYLSIVYRGKEIN
Ga0307507_1000019127	F000746	N/A	MITTGLIEHMVAVVGNIEEGTINVNYKATVEVLVEVYFKVIARRSAMFIRS
Ga0307507_1000019128	F006298	N/A	MERKLVIKNSNSLYTIYLTILCKVLVRRVVLNFHIYKELFNLINLTLKVFYAFVLNQEALEVGYSNLTISNVSYTLTELIICLFLLIKGVSS
Ga0307507_1000019130	F082146	N/A	MFYVSLLQCLKDNSMTYKILLLLPIIINNGNGFYFINLINNMQ
Ga0307507_1000019131	F000630	GAG	MGVKGIEAVLGKRNPSYSIVNAMGGKHLRAPRRPNKGRKYNSNTLKNRNNRTKRLALLGRCSSR