Scaffold Ga0307507_10000182

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000182
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114849
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F003457	Metagenome	485	Y
F005943	Metagenome	385	Y
F007161	Metagenome	356	Y
F015182	Metagenome	256	Y
F041034	Metagenome	160	Y
F056213	Metagenome	137	Y
F080892	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000018211	F080892	AGAAG	MPVVNIIENLLLLAASTYIDPLDVEILVINIIEDLLLLAASTCKDPLVLV
Ga0307507_1000018217	F056213	N/A	VDFGIRRSILLYCLLITFAQALRAPGRSIPIREVFSLGLRDLIRLLTSAELF
Ga0307507_1000018226	F003457	N/A	VARLVCFFSAKAFLISAIITAKIVCLGFLASCANRVAPIMWISKVLSGLGSSLVSYIILGLVLGTELVLDLGLGSLSILFIVEY
Ga0307507_1000018227	F041034	GAG	MWFSIISRFLVDVGGILRLVELGRLFRYRVDVSRNFRLVNPSGFFRF
Ga0307507_1000018228	F007161	AGCAG	VPYYLVNRCKLDRGIVLKLGLKVPLGIPCGLTKEVEHFGFFRKEIVIVNAELSLYLNPPILKGRVYPIG
Ga0307507_100001823	F005943	GAG	VVKRRNVMSRGGGSGYKTYVFKESTRRCAIDRKGRGRKEVIYLRVADVSCTRGVRESTGLSYGGPCGGVP
Ga0307507_100001824	F015182	N/A	MASGYITKAINNFFKEIFLVFSIVLGKGFSIFLEFNIELIK
Ga0307507_100001826	F000247	N/A	MRITLNYKRTPRIEIAYTNCLTGSLNIFISITLVSSSGVLFTRPFIDGKLYYNGGLSLNKSIDLTSTGL