Scaffold Ga0307507_10000174

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000174
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115902
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F009949	Metagenome	310	Y
F015182	Metagenome	256	Y
F021494	Metagenome	218	Y
F091119	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000017421	F009949	AGG	MGGKYLRALKGPNKGRKYNGNTLKDRNNRTKRLALLDRCPSR
Ga0307507_1000017431	F091119	GGA	VSWNAGNGYKAYIFRESTRRYAIDYKGRGRKEVIYPRVADISCI
Ga0307507_1000017433	F015182	GGCGG	VTKAISDFFKEIFLVFSVILGKDSSVFLEFNIELVK
Ga0307507_1000017435	F021494	AGG	VFYVSISASISKSIIVSGSSPGLTSQLYTLYRLAVNVRFAAFSLILNYPSLKLAIAVYRGLPTGRSLLYVPYNPYIPI
Ga0307507_1000017438	F002220	AGG	MHLLKSNSIVKLSFSFGFTIRFAFTSSSSLRAKNWLSPKIIILLVYMPTILNGVPVVVIRKQGSNIEVVIKSFSL
Ga0307507_1000017441	F000746	GGA	MVAVVGNTEEGIINIDYKVTVEVLMEVYFKVIARRSAMFVRSQSAG