Scaffold Ga0307507_10000166

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000166
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118591
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (55.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F008074	Metagenome	339	Y
F008599	Metagenome	330	Y
F009949	Metagenome	310	Y
F024756	Metagenome	204	Y
F060493	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000016612	F024756	GAGG	MPIYSIVYYITVGESTGTNGLKRLILYLGSVIVAGETEISNLYKTFPDLLL
Ga0307507_1000016618	F008599	N/A	VERIGLLYRQKEHLYPLITILGDQIAYGKGIINLKTGPI
Ga0307507_1000016646	F002220	AGG	MHPLKSNNVIKLSFSFSFTIRFAFTSLSSLRAKNWSSPKIIVLLVYMPIIPNRVSVVVIRKQGLNIEVVIKSFSL
Ga0307507_1000016648	F008074	AGAAG	LEYWLAAKIYNVDNNIEVEVVVIFKGELKLARGPLVHLAVVVVFYKILNCLDFNFIAYLLKNPKQLINR
Ga0307507_100001667	F009949	AGGA	MVNTIESKYLRALRRPNKGRKYNSNTFKNRNNRTKRLALLGGCSSK
Ga0307507_100001668	F060493	N/A	MQRDFIVLMLSLDISGAYNNVPYKRLLYILRVKGFPK