Scaffold Ga0307507_10000162

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000162
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119654
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (55.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F064296	Metagenome	128	Y
F080892	Metagenome	114	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000016247	F064296	AGG	VLYNPPIVDTTAISAIVFHFNIYQKDNEVFIISLYKINRIINKREEKLIKETNKELVKYLLPTVYTKYKDVFLRAALDKLPPYRMYNYKI
Ga0307507_1000016254	F096350	AGTAGG	VYFISARAFLILAIVMAKIIYLGFLVSYTNRVALIIQISIERGVSYQLATSF
Ga0307507_1000016257	F000630	GGA	MLERYIGVKVIEANLGKRNLSYSIVNVIGGKYLRALRRPNKGRKYNNNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000016262	F080892	AGAAG	MLVVNTIEDLLLLVASTYIDPPDVETLVINIIEDLLLLAASTYRDPPVLV
Ga0307507_1000016263	F002220	AGG	MHPLKSNSVVKLSFSFSFAIRFTFTSLSSLRAKNWSSPKIIILLVYMLTILNRVPIVIIRKQGLNIEIVIKSFSLWCLL