Scaffold Ga0307507_10000160

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000160
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119762
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F002793	Metagenome	529	Y
F003725	Metagenome	471	Y
F006298	Metagenome	376	Y
F017572	Metagenome	240	Y
F020829	Metagenome	221	Y
F035578	Metagenome	171	Y
F038017	Metagenome	166	Y
F056201	Metagenome	137	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100001601	F056201	N/A	MAPSRSVKLRGLNTLTRKIPYGRMPRQIIVVGVPREYLSIVYRGKEMN
Ga0307507_1000016014	F061416	GGA	MHFKVVQKGVKLVISLNQVAYAELFLIGRALKWFKLYLTEI
Ga0307507_1000016018	F017572	N/A	MLEPVYGNVKPPVYKADIYKGQEEDKWQVLKIISHKDIDDEI
Ga0307507_1000016019	F002220	N/A	MRFAFTSLFSLRAKNWSSPKIIILSVYMPTIPNRVPIVIIKKQGLNIEVVIKSFSL
Ga0307507_1000016021	F006298	GAG	LVVKDSNGLYAIYLTILGKVLVRRVVLNFHIYKELFGLINLTLKIFFAFILNQEALEVGYSNLIISNVLYTLAKLIICLLLSIKRVPS
Ga0307507_1000016022	F035578	GGA	MVARVGDIAEGTINVNYKVIIEVLVEVYLKTIDRRNAMFIRSQIAG
Ga0307507_1000016024	F000630	N/A	MLERCIGVKGTEANLGKRNPSYSMVNAMGGKYLRALKRPNKGRKYNGNTFKNRNNRTKRLALLGRCPSR
Ga0307507_1000016025	F020829	AGTAGG	MPLVSSKLITNIIFFIYGTPLTLGLYILIIYTGPLYVWIIITIISRLTTYHNYKDRLIALLIIKHMHIAAFGLYRS
Ga0307507_100001603	F002793	AGGA	MDQTDVTPLVDDLKILGIFKDKDKEEGDSVTDALSTML
Ga0307507_1000016031	F003725	N/A	METLINLHNYLKSIVKLVQERIKRYYNAKRSKGPDLKEGDKVWLPHKNFKS
Ga0307507_1000016038	F038017	AGCAG	VVRLTRYRFKLKDKDELKVNLKYTAYYILLWIAYIDNTYNIYRVSKDKNRKYLVRIY