Scaffold Ga0307507_10000148

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000148
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122724
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (57.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005943	Metagenome	385	Y
F007022	Metagenome	359	Y
F013992	Metagenome	266	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F041673	Metagenome	159	Y
F053802	Metagenome	140	Y
F061416	Metagenome	131	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100001481	F041673	N/A	MFFLGIPYRPTSFLTIYKALLTGLSAGVCFRTGVAAGVIGRTWLVRVLLAVAAVRKVDV
Ga0307507_1000014813	F061416	AGGA	MHFKVIQKEVKLATIIDQVAYIGLFLIGRVLKWFKPYLTKIMVNSILTTN
Ga0307507_1000014818	F005943	AGG	MLWDGGNSYRAYVFKESTRRCAIDRKGQGRKEVIYLRVANVSYTRGVRGSTGLSYRGPYSGVP
Ga0307507_1000014821	F013992	GGA	MAVVVVLYIAVNIRNHSGLVVMVIDNLIGLILSRIGYRDLSICFGDKLSP
Ga0307507_1000014823	F021494	GAG	MFYISISAFISKSVIISSSSPNLTGWLYTLYRLAVNIIFAVLSLILNYPSLKLAVAIHRGLSIGCSLPYVPYNPYIPI
Ga0307507_1000014826	F078226	N/A	MLDIDADKNTNNNNSEEELEDPNGCYLILFGTLTIDKATSISVELANKACTYLLTTTSIEPTIETNPFNYNITTAALRYTSIVFIGIIINTSMLKKSMAGYRQF
Ga0307507_1000014829	F053802	GGA	MRNYISLVAVKRMRLLYRQKEYLYLLIIILEDLIAYRGGIINLKTEPI
Ga0307507_1000014839	F020829	AGTAGG	MPLISSKLITNIIFFICGTPLTLGLYTLIIYTGPLYIWIVITAISGLTTYYNYKDRLIALLIIKHTQVAAFGLYRSWNP
Ga0307507_100001488	F007022	N/A	MVTCFNYGKNSYFTTSCPELKDTGNIKEIEKEELSNKLGKEEP