Scaffold Ga0307507_10000146

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000146
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122913
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (69.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F005943	Metagenome	385	Y
F007022	Metagenome	359	Y
F009949	Metagenome	310	Y
F032105	Metagenome	180	Y
F038017	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000014614	F005943	AGG	VVKRRNVMSRGGGSGYKTYVFEESIRRCAIDRKGRGRKEVIYLRVADVSCTRGVREGTGLSYRGPCGGVP
Ga0307507_100001462	F002555	GGA	MLGIFKDKDKEKGDGVTDALSTILQLLGEESAEAS
Ga0307507_1000014621	F007022	N/A	MYFNYRKDSYFTISYPELKDIGNIKEIKEEEISNKLGKEEL
Ga0307507_1000014622	F032105	GGA	MDIIITAKAPQLKPVRIIDILKGNILSPTIIADKILLKTIKVTISNCLIYMPKVAKLFFKPLLLPLIEPY
Ga0307507_100001464	F038017	GAG	VVRLTRYRFKLKDKNKLRVNPKNAAHYKLLWIAYMDNIYNIYRAPKDKNWKYLVKIY
Ga0307507_100001469	F009949	GGA	MGNAMGGKYPRAPRGPNKGRKYNGNTLKDRNNRTKRLASLGGCPSR