NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000122

Scaffold Ga0307507_10000122


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000122 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131541
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (36.67%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000746Metagenome908Y
F002220Metagenome581Y
F002555Metagenome548Y
F005943Metagenome385Y
F016255Metagenome248Y
F017572Metagenome240Y
F039539Metagenome163Y
F096350Metagenome104Y
F096933Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100001221F016255N/AMPSFIPLSMSNSYLVKELNIRDVDNKIIKDAFKDALSFTNPLGSLSRE
Ga0307507_1000012210F005943AGGMLWDGGNGYRAYIFKESTGRYAIDHKGRGRKEVIYLRVANVSYTRGVSKSTGLSYKGPYSGVP
Ga0307507_1000012211F039539AGGAVDLLENNTPMELNKLLPLDFEKFIRPKKKLTNKELHKLLPKAYYNLIEFFLQKSVDTLPP
Ga0307507_1000012212F096933AGGMHIIIIVTSGSVTKAIGNLFKKIFLVFSIVSGKNSSVFLELDIELIK
Ga0307507_1000012215F002555AGTAGMLEIFKDEDKEEGDGITDSLSTILQLLGEELAEASWLI
Ga0307507_1000012217F017572N/AMLEPAYGNIKPPVYKADTYKGQEKDKWQVLKIISYKDIDDKI
Ga0307507_1000012226F096350N/AMAGLVCFFSTRAFLILAIITVKIVYLGFLASYTNRVALII
Ga0307507_100001223F002220AGGMHPLKSNSIVKLSFSFSFAIRFAFTSLSFLRAKNWSSPKIIVLSVYMPIIPNRVPMVVIRKYRLNIEVVIKSFSL
Ga0307507_100001224F000746GGAMVAVVGNTVEGTINDYKVKVEVLVEVYFKVIARRSAIFVRN
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