Scaffold Ga0307507_10000121

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000121
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131644
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (60.98%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F003457	Metagenome	485	Y
F005943	Metagenome	385	Y
F007022	Metagenome	359	Y
F015182	Metagenome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000012114	F007022	N/A	MCFNYRKDGHFAISCLELKDIGNIKEIKEEETSNKLEKEEP
Ga0307507_1000012122	F003457	N/A	MKIMCSGFLASCASRVALIMWMSKVLSEFRLFLVSYIVSCLGLGLVLVTELVLDLGLGSLSILFIVEY
Ga0307507_1000012130	F005943	AGG	MLWDGSSGYKAYVFEESTRRCAIDRKGQGRKEVIYLRVADVSYTRGVRESTGLSYGGPCGRVP
Ga0307507_1000012131	F015182	N/A	MDIIIVMAGGCVTKAISNFFKKIFLVFSIVLGKGSSIFLEFNIKLVK
Ga0307507_100001217	F002220	AGG	VHLLKSNGVIKLSFSFSFAIRFTFTNLSSLRAKNWSSPKIIILLVCMLIIPNRVPIVIIRKHRLNIEVVIKSFSL