Scaffold Ga0307507_10000120

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000120
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131683
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (51.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002220	Metagenome	581	Y
F006298	Metagenome	376	Y
F041034	Metagenome	160	Y
F056213	Metagenome	137	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000012026	F056213	N/A	VDFGIRRSILLYHLLITFTQALRAPNRSTPIREGFSSGLRDLIRLLISIELFQPISFI
Ga0307507_1000012027	F041034	AGG	VDVSRILMLVKFSGILRLVELGGFFRCRVDVSRNFKLVDPGGFFRFWFRV
Ga0307507_1000012035	F006298	N/A	MEHRLVIKNSNGLYAIYLTILSKVLVRRVVLNFHIYKELFNLINLTLKVFYAFVLNQEALEVGRSNLAISNVSYTLTELIICLFLFIKGVSS
Ga0307507_1000012036	F002220	AGG	MHPLKSNSVIKLSFSFSFAIRFAFTSLSSLRAKNWLSSKIIILLVCMPIIPNRVPVVIIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000012043	F081096	N/A	MHIYGGGYRGNTGQLDKVLTVRDIGQLIKGGDISLVSRRGGSRLSGAGPSVSTAPLL