NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000118

Scaffold Ga0307507_10000118


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000118 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)132266
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (45.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F000746Metagenome908Y
F002220Metagenome581Y
F006298Metagenome376Y
F037003Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000011810F002220N/ALFRERIHLLKSNGVIKLSFSFSFAVRFAFTSLSSLKAKNWSSPKIIILLVYILIIPNRVPVVIIRK
Ga0307507_1000011811F000746GGAMVAVVGNMEEGIINVDYKATVEVLMEVHFKVIARRSAIFIRSQSAS
Ga0307507_1000011817F000630N/AVLERHIEVKDIEANLGKNNPSHSIVNAIGGKYLRALKRPNKGRKYNSNTPKNRNNRIKRLALLGKRPSR
Ga0307507_1000011824F006298N/AMERRLVVKDSNGLYAIYLTILSKVLVRRVVLNFYIYKELFGLINLTLKIFFAFILNQEALEVGYSNLIISNVSCALAKLIICLLLSVKRVPS
Ga0307507_1000011827F037003AGGAMVEGEIKKYATKDETMEKTVEVKRNYLSVLAMHYSWTTPLTERACKDIL
Ga0307507_1000011830F000630N/AMLERRIGVKGIEANLGKRNLSRGIVNAIGGKHLRAPKRPNKGRKYNSNTLKNRDNRTKRLALLGRCPSRQPKI
Ga0307507_100001189F006298N/AMERRLVIKDSDSLYTIYLTILGKVLVKRVVLNFYIYKELFSLINLTLKIFFAFILNQEALEVGYSNLIISNILCALAKLIIYLLLSVKRVPS
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