Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000117 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	132542
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (58.06%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae	(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F006298	Metagenome	376	Y
F014479	Metagenome / Metatranscriptome	262	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome

1464

Metagenome

376

Metagenome / Metatranscriptome

262

Protein ID	Family	RBS	Sequence
Ga0307507_1000011768	F014479	N/A	VGLKGFQLLSSSIITVVEGVCVFLSVAGNRRYVRVFELLVYLGVRARSAVLPKGLYYCNLLLLEGPSCLSATAVHKVFMEFPFRSSRDFKGG
Ga0307507_1000011770	F000247	AGG	VQTNTIYIVLSYKRTPRMEVAHTNYLTSSLNIFIDTTLVPSSSVPFTYLSIDRKPYYNGSLSLNKSIDLTSTGL
Ga0307507_1000011785	F006298	N/A	MERRLVIKDSDSLCTIYLTILGKVLVGRVVLNFYIHKKLFSLINFTFKIFFAFILNQEALEVGYSNLIISNVSCALAKLIICLLLSIKRVPS
Ga0307507_1000011789	F014479	GGAGG	LLSGSVITIVEGVCVFLRVVSNCRYIRVFELLAHLGVGARLAVLPRGLYCRNLLLLEGPSCLSAMAFYEVFMEFPFGSSRDF
Ga0307507_1000011791	F000247	N/A	MHIALNCKRTPRMEVARTSCLAGSLNIFIGKTPVPSSDVLFTYPFVDRKLYYNSSLSLNESIDPTSTGL

Protein ID

Family

RBS

Sequence

Ga0307507_1000011768

N/A

VGLKGFQLLSSSIITVVEGVCVFLSVAGNRRYVRVFELLVYLGVRARSAVLPKGLYYCNLLLLEGPSCLSATAVHKVFMEFPFRSSRDFKGG

Ga0307507_1000011770

AGG

VQTNTIYIVLSYKRTPRMEVAHTNYLTSSLNIFIDTTLVPSSSVPFTYLSIDRKPYYNGSLSLNKSIDLTSTGL

Ga0307507_1000011785

N/A

MERRLVIKDSDSLCTIYLTILGKVLVGRVVLNFYIHKKLFSLINFTFKIFFAFILNQEALEVGYSNLIISNVSCALAKLIICLLLSIKRVPS

Ga0307507_1000011789

GGAGG

LLSGSVITIVEGVCVFLRVVSNCRYIRVFELLAHLGVGARLAVLPRGLYCRNLLLLEGPSCLSAMAFYEVFMEFPFGSSRDF

Ga0307507_1000011791

N/A

MHIALNCKRTPRMEVARTSCLAGSLNIFIGKTPVPSSDVLFTYPFVDRKLYYNSSLSLNESIDPTSTGL

NMPFamsDB