Scaffold Ga0307507_10000116

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000116
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132793
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (52.94%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002793	Metagenome	529	Y
F015182	Metagenome	256	Y
F024756	Metagenome	204	Y
F027375	Metagenome	194	Y
F032490	Metagenome	179	Y
F032886	Metagenome	178	Y
F054477	Metagenome	139	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000011618	F064278	N/A	LLNPLYTIPLTNTYYNTLINPTIIIEKDSYFTLPCLKLKDIGNIKEIEEEKVSNKLEKEEPPKKTLP
Ga0307507_1000011619	F027375	N/A	VPNKSHRSKNRSASSATVIVIIIAKYPKNFIYLLTITKIALATSLVLILVGGKPIIKSIISSNIGPYGIESTNNSPYRRCLDIYIL
Ga0307507_1000011620	F024756	GGA	MPIRSMAYYITVRESTGTNSLKRLILYLRSIIAAGEIEISNLYKPFLDLLL
Ga0307507_1000011621	F002793	N/A	MDIIPLVNNLKILEIFKDKNKEKGDGIMDALSIIL
Ga0307507_1000011623	F054477	N/A	VSISLGVKARANKLNSPGIDWRCRLSIGIRLFFRFNIVANKEYYLTIMGFLEV
Ga0307507_1000011624	F015182	N/A	MASGYVTKVISNFFKEIFLVFSIVLGEGFGVFLEFNIELVK
Ga0307507_1000011629	F032490	N/A	MLNLKNNLIPILNPQRQLILGGFNLLALALTPKGKPSGLKNYNNLSKVDIDNILSFISYITTDK
Ga0307507_100001164	F032886	AGTAG	LEYLLINSDKDEKEANWKHLDLNNATEAETETITKRGLVTDIITPLDTISIALQDNRSNV