NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000105

Scaffold Ga0307507_10000105


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000105 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)138245
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (63.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000630Metagenome971Y
F000746Metagenome908Y
F007161Metagenome356Y
F014479Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000010512F000247AGGVQTNIIHIVLSYKRTLYIEVARTNYLASSLNIFIDITPVPSSSVPFAYLSTGGKPYYNSGLSLNKSIDLTSTGL
Ga0307507_1000010513F014479N/AVGLEGFRLLSSSVITVVKGVCVFLSVASNCRCAKVFELLVHLGVGACLAVLPRGLYCCNLSLLEGPSCLSVTAVYKVFVEFPFRLSRDFKGGWWI
Ga0307507_1000010519F000630GAGMGVKGTEVDLGKGNPSHSIGNTIGGKYLRALRRPNKGGKYNGNTLKDRSNRTKRLALLGRCPSR
Ga0307507_1000010521F000746N/AMVGNTVKGTINVNYKAIIEVLMEVHFKAITKRSAMFIRSQIAG
Ga0307507_100001054F007161AGTAGVPYYLVNRCKLDRGIVLKLGLKVPLGIPYGSTKEVEHFGFFRKEIVMVNAELFLYLNPLIFKGRVYPIRQ

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