Scaffold Ga0307507_10000105

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000105
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138245
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (63.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F007161	Metagenome	356	Y
F014479	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000010512	F000247	AGG	VQTNIIHIVLSYKRTLYIEVARTNYLASSLNIFIDITPVPSSSVPFAYLSTGGKPYYNSGLSLNKSIDLTSTGL
Ga0307507_1000010513	F014479	N/A	VGLEGFRLLSSSVITVVKGVCVFLSVASNCRCAKVFELLVHLGVGACLAVLPRGLYCCNLSLLEGPSCLSVTAVYKVFVEFPFRLSRDFKGGWWI
Ga0307507_1000010519	F000630	GAG	MGVKGTEVDLGKGNPSHSIGNTIGGKYLRALRRPNKGGKYNGNTLKDRSNRTKRLALLGRCPSR
Ga0307507_1000010521	F000746	N/A	MVGNTVKGTINVNYKAIIEVLMEVHFKAITKRSAMFIRSQIAG
Ga0307507_100001054	F007161	AGTAG	VPYYLVNRCKLDRGIVLKLGLKVPLGIPYGSTKEVEHFGFFRKEIVMVNAELFLYLNPLIFKGRVYPIRQ