Scaffold Ga0307507_10000101

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000101
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139105
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (45.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F002793	Metagenome	529	Y
F003725	Metagenome	471	Y
F017572	Metagenome	240	Y
F029000	Metagenome	189	Y
F038017	Metagenome	166	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000010125	F002793	N/A	MDITPLVDNLKMLGIFKDKDKEEGDSVIDSLSIML
Ga0307507_1000010126	F017572	N/A	MLEPAHGDIKPPVYKADTYRGQKEDKWQVSRIIGYEDVDDKI
Ga0307507_1000010134	F078226	N/A	VLDIDADKNTNNNNSEEELEDPNGCYLILFRTLTIDKATSISVELANKACAYLLTVTFTEPTTETDPFNYNIITAALRYTSTVFMGIMIDTNALKKSMAGYR
Ga0307507_1000010137	F029000	N/A	MRYIIPINLINIILVAKYFIKYVFKLHELPNLIISNYKSQFVLDF
Ga0307507_100001014	F038017	AGCAG	VVRLIRYRFKLKDKDKLRVNLKYTAHYTLSWIAYVDNTYNIYRALKDKNQKYLVRIY
Ga0307507_100001017	F002793	N/A	MDIIPLVDDLEILGIFKDEDKEKGDGITDTLSTVL
Ga0307507_100001018	F003725	AGCAG	MEILINLYINLMETAKVVQQRIKKYYNAKRSKGLDLKKGDKV
Ga0307507_100001019	F002555	N/A	MLEIFKNKDKEKGDSIINALSTILQLLREELEEAS