Scaffold Ga0307507_10000093

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000093
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140468
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (36.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F007022	Metagenome	359	Y
F016255	Metagenome	248	Y
F026200	Metagenome	198	Y
F056201	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000932	F016255	N/A	MSNSYLVKELNIRDINNKIIKDAFKDALSFTNPLGSLPRE
Ga0307507_1000009320	F007022	N/A	LAICYNCDKEGYFALSCPELKDIGDIKEMEEGETSNELGKKEP
Ga0307507_1000009321	F000630	GAG	MGVKGIEVDLGKGNLSYSIGNTIGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLALLGGYSSR
Ga0307507_1000009336	F056201	N/A	MAPSRSAKLRGLNTLTRKIPYGRIPRWIIVVGVPREYLSIAYRGKEKN
Ga0307507_100000938	F026200	N/A	MYIKDLFKFPLIYDITVIIPFSYPTCNITTFLFINTYLTRDLFREPEADF