Scaffold Ga0307507_10000085

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000085
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145635
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (67.19%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F029000	Metagenome	189	Y
F050242	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000008544	F000630	GGAG	MGVKDTEAILGKRNPSYSIVNAMGSKHLRALRRPNKGKKYNGNTFKNRNNRTKRLALLGRCPSR
Ga0307507_1000008545	F020829	AGGA	VPLVSSKLITNIIFSIYRTLLTLRLYILIIYIGPLYVWIIITVISRLTTCYNYKNRLIALLIIKHIYIAAFGLYRS
Ga0307507_1000008549	F020829	GAGG	MSPNKIDFVPLVSSKLITNIMFSVYRTPLTLRLYTLIIYTSPLYIWIVITIISRLIACYNYKDRLIALLIIKYTRIAAFGSYRS
Ga0307507_1000008550	F021494	GAG	VSYVPTSASISKSVIISGSSPDFTGRLYTLYRSATNVIFAALSLILNYPSLKLAIDVHRGLPIGRPLPYIPYNPYIPYNPYIPVWFSNIAQRRF
Ga0307507_1000008552	F050242	GGA	VGLYIPTGTAKDVGHLGLSSREVVYINFKLVLQLKLPIIKYRVSSVCKQ
Ga0307507_1000008554	F000630	GGAG	MGVKGIEVGLGKGNLSYSMGNIMGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000008555	F021494	GAG	VSYIPTSLSKSKSVIASGSSPVLTSWLCAPYKPAAYIIFTALNLILNYPGLKLAVAVYRGLPTGRPLPCVPYVPYVPVRSGDVAWRCF
Ga0307507_1000008561	F021494	N/A	MSYVPTSASISKSVTISGFSPNFTSRLYTLYRLAVNIIFAVLSLILNCSGLKLTIAVHRGLSMGCPFLCVPCNPYVPI
Ga0307507_1000008563	F029000	AGG	MVVVNYLIKMRYMISMDLINAILVAEYFVKHVFKLHGLPNLIISDYRSQFVLDF