Scaffold Ga0307507_10000077

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000077
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151124
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (34.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007022	Metagenome	359	Y
F050242	Metagenome	145	Y
F064278	Metagenome	128	Y
F064533	Metagenome	128	Y
F089656	Metagenome	108	Y
F096350	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000007727	F050242	N/A	MRLYIPASTAEDVGHFSLGNREVIYINFKLILQLKLLIVKYRVSSVYKQ
Ga0307507_1000007741	F096350	N/A	MAGLVYFFSARAFLISAIITAKIVYLGFLASYTNRVALII
Ga0307507_1000007743	F007022	N/A	MVTYFNYRKDSYFIISYLELKDIGNIKEIEEEETSNKLGKEEP
Ga0307507_1000007745	F064278	N/A	MPLANACCNTLINPTIVTCFDCGKNGYFTISYLEPKNIGNIKDIEEEETSNKLGKEEL
Ga0307507_1000007746	F089656	N/A	MDRDGYNMVIILVNRFSKRPFLIPYYKNINAKEAA
Ga0307507_1000007748	F064533	N/A	MGGPIYPLYPRIGIGLGSSLRGAFKKSASFIAYWVSIKAKVFAPELAKAEVKT
Ga0307507_100000778	F064533	N/A	MGGPIRLLYPRIGIGLGSSLKGAFKKLASFTAHCISIKVKAFAPESAKAEVKTXYLL