Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000070 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	158468
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (56.25%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

158468

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (56.25%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F003725	Metagenome	471	Y
F014479	Metagenome / Metatranscriptome	262	Y
F056201	Metagenome	137	Y
F064278	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000007012	F000630	GGAG	MGVKGIKADLGKGNLSCSIGNTIGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLSRCPSG
Ga0307507_1000007013	F014479	N/A	VGPKGFRLLFSSIITIIEGVYVFLSIDSNYRYIRVFKLLVHLGVRARLAVFPRGLYYCNLLLLEGPSCLNATAFYKVFIEFLFKLSQDFKGG
Ga0307507_1000007025	F064278	N/A	MSLVNACYNTPINPTIVICFNYGKDSYFTISYLELKDIGNIKEIEKEEMSNKLGKEEP
Ga0307507_1000007026	F000630	GAG	MGVKGIEVDLGKGNPSHSIGNAMGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGGCSSR
Ga0307507_1000007033	F000630	GGAG	MGVKGIKVDLGKGNLSHSIGNTIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLALLGGYSSR
Ga0307507_1000007040	F003725	N/A	METLISLYNHLKETAKLVKERIKRYYNAKRSKGPDLKEGDKV
Ga0307507_1000007044	F056201	N/A	MAPSRSAELRGPNTLTRKIPYRRVPRGIIVVELSKEYLSMVYRGKEINKVLAKGRLSINR
Ga0307507_100000706	F000746	N/A	MVAVVGNIVKGIINVNYKAIMEVLIEVYFKVITRRSATFVRS
Ga0307507_100000707	F002220	GAG	MHLLKSNSVIKLSFSFSFAIRFTFTSLSSLRAKNWSSPKIIILLVYMLIIPNGVPIAVIRKYRLNIKVVIKSFSLWCLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000070

Overview

Ecosystem & Geography

Associated Families

Sequences