Scaffold Ga0307507_10000066

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000066
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160540
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F003725	Metagenome	471	Y
F009949	Metagenome	310	Y
F017572	Metagenome	240	Y
F032105	Metagenome	180	Y
F038017	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000661	F002220	AGG	VHPLKSNSVIKLSFSFSFAIRFAFTNLSSLRAKNWSSPKIIILLVYMLTILNGVPMVIIRKHRLNIKVVIKSFSL
Ga0307507_1000006612	F009949	AGG	MVNTIGGKHLRALRRPNKGRKYNSNTPKNRNNRTKKLALLGRYPNR
Ga0307507_1000006615	F003725	GGAG	MNLYKDLKEIAKLVQERIKKYYNTKRSKGPDLKEGDKV
Ga0307507_1000006620	F017572	N/A	MLEPVYKDIKPPVYKADIYRGQKEDKWQVSKIISYKDVDNKT
Ga0307507_1000006622	F000630	GAG	MGVKGTEVDLGKGNLSHSMGNTIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLASLGRCLSR
Ga0307507_1000006625	F032105	AGGA	MITAKVPQLKLVRMMDILKGNVLSLTVMADKILLKTIKVTVSNCLIYIPKVTKLFFKPLLLPLIEPY
Ga0307507_1000006629	F000247	AGG	VHTYIISIALSYKRILCTEVACTNCLASSLNIFIGKTLVPSSSAPFTYLFIDRKPYYNSSLSLNKSIDPTSIGL
Ga0307507_1000006630	F000630	GGAG	MGVKGIEVGLGKGNPSYSMGNTMGGKYLRALRGPNKGRKYNSNTFKDRNNRTKRLASLGRCSSG
Ga0307507_100000666	F000247	AGG	VYTYVIYIALNYKRTPHIEVARTSCLASSLNIFIGKTLVPSSNVLFAYPFVDGKLYYNSGLSLNKSIDPTSTGL
Ga0307507_100000668	F038017	GAG	VVRLTKYRFKLKDKDKLRVNLKHIAYYTLSWIAYMDNIYNIHRAPKDKNQKYPVRIY