Scaffold Ga0307507_10000065

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000065
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160945
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (52.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F004318	Metagenome / Metatranscriptome	443	Y
F006298	Metagenome	376	Y
F007022	Metagenome	359	Y
F008599	Metagenome	330	Y
F009949	Metagenome	310	Y
F014479	Metagenome / Metatranscriptome	262	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000006514	F014479	N/A	VGLKGFWLLSSSVATVIEGICVFLSVAGNRRYARVFELLVYLGIRTRLAILPRGLYYCNLSLLEGPSCLSATAFYKVFIEFPFRSLRDFKGGQWI
Ga0307507_1000006515	F000247	AGG	LVQTNIINVALSYKRTLCTEVAHTNCLTGSLNIFADKTLVPSSSVLFAYLSANRKLYYSSGLSLNKSIDLTSTSL
Ga0307507_100000652	F007022	N/A	MIIYLNYKKDSYFALSCLELKDIGNIKEIQEETSNKLGKEES
Ga0307507_1000006520	F000630	GAG	MGVKGLEANLSKRNLNHSIVNAMGDKYPRALKRPNKGRKYNSNTLKDRNNRTKRLALLGRYPSR
Ga0307507_1000006524	F078226	N/A	VQDIDANKNTNNNNSKEELEDPNGYYLILFGTLTIDEVTSISVELANKAYAYLLTITSMEPTTETNPFNYNIITTALRYTSIVFIGIIINTSALKKSMAGYRQF
Ga0307507_1000006525	F006298	N/A	MERRLVIKNSDGLYAIYLTILSKVLVRRVVLNFHIYKELFSLITLTLKVFYAFILNQEALEVGYSDLTISNISYTLMELIIFLLLLIKGVSS
Ga0307507_1000006529	F008599	AGTAG	MGLPYRQKEYLYPLIIILGDLIAYRGGIINLKTGPI
Ga0307507_100000654	F004318	N/A	MSKVLSEFKLSLVSYIVSYIVLGSVLGIKLVLDLGLGSLSIFFIVEYQFF
Ga0307507_100000657	F009949	GGA	MGNAMGGKYPRAPRGPNKGRKYNGNTLKDRNNRAKRLASLGGCPSG