Scaffold Ga0307507_10000063

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000063
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 161300
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (41.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F016255	Metagenome	248	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F025697	Metagenome	200	Y
F041673	Metagenome	159	Y
F056213	Metagenome	137	Y
F066630	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000631	F000630	N/A	MGVKGIEVDLGKGNLSYSIGNTMGGKYLRAPRGPNKGGKYNSNTLKDRNNRTKRLALLGGYPSR
Ga0307507_1000006319	F000630	N/A	MLKRCIGVKGIEADLSKRNLSHSIVNAMGGKHLKALRRPNKGRKYNGNTLKNRGNRTKRLALLGRCPSR
Ga0307507_1000006321	F020829	AGTAGG	MPLVSSKLINNIMFSVYGTPLTLGLYTLIIYTGPLYIWIIITVISRLTACYNYKDRLIALLIIKHTRMAAFGLYRSWNPYGQYVNYV
Ga0307507_1000006325	F066630	N/A	MLLAAGTENYNTLLLIQKGLKAATWWLISQNILDQFWVAKEIAIEGKGASNRRPLITLQE
Ga0307507_1000006327	F021494	GAG	MSYIPINASISKSVIVSSSSLILTGWLYTLYKSAANVIFAALSLILDCPGLELAMAVHKGLPTGRPLPCVPCDPYVPIRSNNVARR
Ga0307507_1000006341	F016255	N/A	MPLFIPLNTSNSYLVEELNMRNINNKIIKDAFKDALSFTNPLESLPRE
Ga0307507_1000006345	F025697	AGGCGG	VDGKVAYSKDAGSGKASSKKVSGFLADFALSLLLSSTKPYKERFGIYFLKLY
Ga0307507_1000006364	F041673	N/A	MLFLGMPYRPASFLTIYKALLASLSIGVYFYTEVAIGVTGGTWLVWVLVVVAVRKIGI
Ga0307507_1000006366	F056213	N/A	MDFSVRRSISLYYLLITFTQALRAPSRSTPIREVFSLGLRDLIRLLTSTESFQPISFI