Scaffold Ga0307507_10000049

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000049
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170691
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (28.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004318	Metagenome / Metatranscriptome	443	Y
F026200	Metagenome	198	Y
F029000	Metagenome	189	Y
F067281	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000004916	F026200	N/A	MLVYLFIIYIKDLFKFLLIYNIAVIIPFSYPAYNIITFLFINMCLTKDLFREPEADF
Ga0307507_1000004966	F067281	AGG	MLGIYCTYTSSRFNFCFIKLVTLKLHNYNSLEKTIIRRVEKHFIKRLNVVALNTVSTLTRMSFVYAPHIIGLSLNQLITSESVVVVYTKQ
Ga0307507_1000004968	F029000	N/A	MRHMIPIDLIDIILVAECFVKHVFKLHRLPNLIISNRGSQFVLDF
Ga0307507_100000499	F004318	N/A	MSKVLSKLKSSLVSYIVSYSGSSSVLGTELVLDLGSGSLSILFIVEY