NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000046

Scaffold Ga0307507_10000046


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000046 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)172467
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (64.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F000746Metagenome908Y
F024756Metagenome204Y
F027375Metagenome194Y
F067281Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100000463F024756GGAMPIHSIAYCTMVGESTGTNSLKRLMPHLESIMAAGETEISNLHKTFPDLLL
Ga0307507_100000464F027375N/AVLNRSYHSKNRSTSSAAVIVIKIVKYPENFIYLLTITRIVLVTSLVLVLVGGKPIIKSIVNSNMGPYGIGSTNNSLYRQCLGICTLWHVLYLNI
Ga0307507_1000004666F000746N/AMIITGLIEYMVAIVGNITEGTINVNYKAIVEVLIEVHFKVIIRRSTMFIRSQIAG
Ga0307507_1000004684F000630GGAGMGVKGTEADLGKGNLSYSIGNAMGGKYLRAPRGPNKGRKYNSNTLKDRNNRTKRLALLGGCPSK
Ga0307507_1000004685F000746GGAMAVVGDTVEGIISVNYKVIIEVLIEVYFKVIARRSAIFIRSQIAS
Ga0307507_1000004697F067281AGGMLGICYTYTSSRFNFCFIKPVTPKLHNYNSLEKTIIGRVEKHFIKRLNIAALNTTSTLIKMSSVYALYIIGLSLNQLITFKSVAVVYTKQ
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