Scaffold Ga0307507_10000041

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000041
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 181562
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (53.73%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F003725	Metagenome	471	Y
F004318	Metagenome / Metatranscriptome	443	Y
F009949	Metagenome	310	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F032886	Metagenome	178	Y
F056213	Metagenome	137	Y
F067281	Metagenome	125	Y
F081096	Metagenome	114	Y
F084969	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000411	F009949	N/A	IGNTMGGKYLRALRGPNKGRKYNSNTLKDRNNRTKRLALLGRCPSG
Ga0307507_1000004113	F067281	AGG	MLGIYCTYTSSKFNFCFIKPVTLKLHNYNSLEKTIIRRVEKHFIKRLNVAALNTASTLIRMSSVYTPHIIGLSLN
Ga0307507_1000004119	F021494	AGG	VSCVPTSASISKSVIVSSSSPSLTSWLYALYRSAANVRFAAFSLILNYPGLKLAIAVYRGLSIGRPLPCVPYNPYIPIRSSNIAQRHFWPVKAWDGWPSPLVLKVGNAGKAPVSP
Ga0307507_1000004120	F020829	GAGG	MSPNRIDSVPFIANIIFSIYGTLLTLGLYTLIIYTGPLYIWIVITIISRLTAYYNHKDRLIALLIIKHTHMATFSLYRS
Ga0307507_1000004123	F081096	N/A	MHTYGGGYRGNIGQSDKDSTVRDTGQLIKGGDTSLVSRRGESRLSSMGPSISTAPLLQDTVGLL
Ga0307507_1000004126	F081096	N/A	MHIYRGGYRGNTGQLDKDLIVRDIGQLIKGGDISLVSRRGESRLSGIGPSISTAPLLQDTVGLL
Ga0307507_100000415	F000247	AGG	VHTYIKRITLSYKRIPYTKAARTNCLASSLNIFIGKTPVSSSGVLFTRPSIDGKLYYNSSLSLNRSIDLTSTSL
Ga0307507_1000004150	F084969	N/A	MLLKVLVIMLSIAAITLGLGGDTSIGDIDSQLVIVG
Ga0307507_1000004153	F004318	N/A	MLRVLGKLLLSIVSYMVSYSILGLVLGIELVLGIELVLDLGLGSLSILFIV
Ga0307507_1000004155	F003725	N/A	MEMLINLYNYLKKTAKLVQEKIKKYYNTRRSKGPDLKEGDKVWLLYKNFKS
Ga0307507_1000004164	F032886	N/A	MELKYLLINSNKEEKGANWERLNLNNVIKAETKTTIERGLVMGFIIPLDIKSIAL
Ga0307507_100000417	F056213	N/A	VDFGVRHSILLYCLLIIFTQALRAPSRSIPIREVFSLGLRDLIRLLTSAELFQPVSFI