Scaffold Ga0307507_10000018

Overview

Basic Information

• Taxon OID: 3300033179
• Scaffold ID: Ga0307507_10000018
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 224203
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (63.64%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.5508
  • Long. (^o): -123.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F004318	Metagenome / Metatranscriptome	443	Y
F005943	Metagenome	385	Y
F008074	Metagenome	339	Y
F014479	Metagenome / Metatranscriptome	262	Y
F016255	Metagenome	248	Y
F020829	Metagenome	221	Y
F037003	Metagenome	168	Y
F041034	Metagenome	160	Y
F094694	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_10000018100	F020829	AGGA	MPLVSSKLITNIIFSIYGTPLTLGLYTLIIYTGPLYIWIIITTISRLTTCYNYKDRLTALLIIKHTYIAAFSLYRSWNP
Ga0307507_10000018107	F004318	N/A	VLSGLRLSLVSYIVLGLVLGLVLDIELVLDLGLGSLSILFIVEYQFF
Ga0307507_10000018109	F041034	AGCAG	MWFGIISRFLVDVGGILMLVEFGGILGLVELGGLFRYRVDFSRNFRLVDFSRFFRFRFRV
Ga0307507_1000001850	F005943	AGG	MLRDGGNSYRAYVFEESTRRCAIDRKGRGRKEVIYLRVADVSCTRGVRGSMGLSHGGPYGGVP
Ga0307507_1000001854	F041034	N/A	VDVGRNLILVEFGGILGLVELGGLFRYRVDVGRNFKLVDFGRFFKFRFRA
Ga0307507_1000001857	F004318	N/A	VLSKLKLSLVSYVVSYLGLGLVLSIELVLDLGSGSLSILFIIEY
Ga0307507_1000001858	F002220	AGG	MHPLKSNSVVKLSFSFSFAIRFAFTSSSSLRAENWLSPKIIILLVCMLTIPNGVPMVVIKKYRLNIKVVIKSFSL
Ga0307507_1000001859	F008074	AGAAG	LEYWLAAKIHNVNDDIEVKVVVIFKGKLESAKGLLVYLAVIVVLYKMLNCLNLDFMACLLKNPKQLVNGWVAKMMV
Ga0307507_1000001866	F016255	N/A	MPFFIPLNTSNSCLVKELNMRNVNNKIIKDAFKDALSFTNPLGSLLKELAF
Ga0307507_1000001867	F000630	GGAG	MGVKGTEANLSKRNLSRGIVNAIGGKHLRALKRPNKGRKYNSNTLKNRDNRTKRLALLDRCPSRQPKM
Ga0307507_1000001869	F000630	GGAG	MGVKGIEANLGKKNLSYSIVNAIGGRHLRALKRPNKGRKYNSNTFKNRNNRTKRLALLGKCTSR
Ga0307507_1000001877	F094694	AGCAG	VVSVLKVGLVYIVCKVLSKYIYLLTLTCIVAVVDFIGKFKCQLFYL
Ga0307507_1000001880	F037003	GAG	MEEIRKEQMVEGEIKEYVIKDEITEETVEVKRNYLSVPVMHYLQTIPSIERACKDIL
Ga0307507_1000001881	F014479	N/A	VGPEGFRLLSSSVVTVIEGVYVFLSVANNHRCIRVFKLLVHLGVRAYLAVLPKGLYCRNLLLLEGPSCLSATAVYKVFVEFPFRSSQDFKGG
Ga0307507_1000001898	F000630	GGA	MLKRRIGVKGTEANLGKRNLSHGIVNAIGGKHLRAPRRPNKGRKYNSNTLKNRDNRTKRLALLGRYSSRQPKMRI