Scaffold Ga0334887_1002020

Overview

Basic Information

• Taxon OID: 3300033169
• Scaffold ID: Ga0334887_1002020
• Source Dataset Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24078
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location

• Location Name: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075591	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334887_100202012	F075591	AGG	MQDMAKLNGLAEAEIDGLMADGIIPTPAEIVELNALAWAVESPESRRLLSRGIPIECGCAYLWPLTLYGQEWFDRVGCRLSNPTAALAYAMAKQYDDGEPLALDGRAAEKAVKAFGRALRCTVAQLNVAISQVLQQEEEADTPPSQSGGMSIGDFSAFLASVAGSTPEFWERRCSAGYTHAVLDAVTRQNTAEGRASSSDPRIRAERALGWAVEKIRQSRKAE