Scaffold Ga0272423

Basic Information
Taxon OID	3300033168 Open in IMG/M
Scaffold ID	Ga0272423_1005697 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033168 Open in IMG/M

Scaffold ID

Ga0272423_1005697 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11196
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11196

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-74.2	Long. (^o)	162.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-74.2

Long. (^o)

162.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10056971	F001951	N/A	MMKFRFIDSSRNKKERNEDTVKTTVTEVMIFEFKELLVNAEMLLTLMNEMMMKTKRDX
Ga0272423_10056972	F009580	GAG	MICIQISEHNLAQKLNFSRRQXDFFIYIDDITVVNIHDTQSEELLIXAFFSNFAXMLQLAVVTQLSLVADFLDFRNDQSLILNDDNDEV
Ga0272423_10056973	F021026	N/A	MIVFCILRQAQSKVLTLALIDSEVSAYVFMNKFFAQQHHFFLHQLTHSHRLXEFHDQVALINDIIHVVEITMILDEHIERLFFYIIELNQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNYCCQFLVKIYNFNQQEENFSLEVNKAAFLLPRSQFAHKKQLSSXITHKKQFSLQIIHKKQFSLQITYKKQFSIQFTCKK
Ga0272423_10056974	F038009	N/A	MSNVIKALNSQLDYVKLYKRLIELICLKNNRSSRKKRILTLDFXXVFLLNNLKNTTRDFLFQMKNKIKRDLFLMNELSISLLLMSQRKVRLLLVNRQKNELLLASKLKTELLLVSELKTELFLSSKLRTKLLLASKLNAELLLVSDL
Ga0272423_10056977	F020121	GAG	MKKLTEHLRDEMLIAQIIYEFNVNLFHYSCFKYFVEDEVRLNACNLSIAHLTVKLNDHNVDFFKIKHVFKNNSLVIELNLSVFMKIYSIFHVTLLNYITSDSLSSQRQKLQELIIIKNDERFXYVNSILNFKRDKCYNSFLLKYYVNXEDHFFTXKSFNLLNNCEQALDEYYLVNSVVEESYVLSCVISQCQCQEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272423_1005697

Overview

Ecosystem & Geography

Associated Families

Sequences