Scaffold Ga0272423_1003585

Overview

Basic Information

• Taxon OID: 3300033168
• Scaffold ID: Ga0272423_1003585
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14668
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F023763	Metagenome	208	Y
F040408	Metagenome	161	Y
F074202	Metagenome	119	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10035851	F094624	N/A	MMYHFEIDDQIEKVNAVMKHYLXVFINYMQNNXVKXLSEVEFVINNTSSSIILTSFFLINLSQNSRLNFKFFKSLFENFMFQAXNKLINVKKFIKKMKKLTEHLHDEMFITQIIYEFNVNLFRRSCFKYFVEDEVXLNVCNLSITHFIIKLNDHNVDFFKIKHVFKNNFLIIELNLLTFMKIHSILHVILLSYIASDLLLNQRQKS
Ga0272423_100358517	F040408	N/A	MYDYKLIFDIHIENDAMKEEVSAAKEHVEMLQDMQNTLMQ
Ga0272423_10035854	F023763	N/A	MLRIKCISLFKKIFXATCQSIQLMIDLVEMISDAIVESRQKLTSMSLMTTQLLNXHEILKIFVIRDYLNRIDKVFELXLSFLKSANNDHEFFIIDFVVTLNXVMLLXKVSDXMKNLILIILRKNVFEHIVXSIDFYHNLVIXIIVMKNNFESEDFLKNVECNLTFLKSDKEYIFSDETSERSSYSTIVINESSIEVREI
Ga0272423_10035857	F001951	GAG	MTMTKFKFIDSSKNEKERNEDTVETTVTKMMIFELKELLVNAEMFLTLMNETMMKMKQD
Ga0272423_10035858	F008735	N/A	MFMRCIRLCFHAFNRFLILKYVKKLLESKSNKNSDRVCREMNNERRLIVQDLCNDLSYYCKRLRIQFYIDXRIENNEXEXDNEIMLSNLVLKLLHCAKDLNXIFDHTLSELFNSTLIIDRKIVKRLHXSKRITKXDFNVXKRCRKCKSFIMSKTELN
Ga0272423_10035859	F074202	N/A	MKTVNCKINCKTIYINFLLMSSCLLCSDNAFNLTFLLNNDFFLKLIISKLRLHVETKLNFKEEVILHCSFFTAKDDDLDSSFNLKIATNFIKFLXFTIFYNDXSSFFDLFLSVKYDVTRSKXANVENQAFKSEVVVDLAELNNINNVSSSKFKNLNCKNVIKRSTSIESLFFSSDIVN